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Carnitine acyltransferases are a family of enzymes responsible for production of acylcarnitines, and among them, they have specificities that cover fatty acids differing in chain-length, branching and other structural features, over the entire range of acyl chain lengths, depending on the cellular location and metabolic purpose, and they enable reversible shuttling of acyl groups between free CoA and carnitine

Importantly, none of these is a contraindication to GLP-1 therapy

Especially around the timeframe that you mentioned

When you are in a calorie deficit, your body does not automatically prioritize fat as its primary fuel source